Example
detecTDA
usage
Calculate persistent homology
Visualize the results of the fit
Calculate and plot summaries
Hypothesis testing and plotting
Example from
Science
Upload video and configure polygonal region
Reproduce Figure 4 plot
Changelog
v0.5.6 (5/4/2026)
Changed
Fixed
v0.5.5 (5/1/2026)
Changed
v0.5.4 (3/20/2025)
Added
Fixed
Changed
v0.5.3 (8/30/2024)
Fixed
v0.5.2 (8/1/2024)
Added
Fixed
v0.5.0 (7/25/2024)
Added
Fixed
v0.4.6 (6/17/2024)
Fixed
API Reference
detectda
Submodules
detectda.hlpr
detectda.hypo
detectda.idpo
detectda.imgs
Classes
Package Contents
ImageSeries
ImageSeriesPickle
ImageSeriesPlus
VacuumSeries
detecTDA
Index
Index
A
|
B
|
C
|
D
|
F
|
G
|
H
|
I
|
K
|
M
|
P
|
S
|
T
|
V
|
W
A
adjust_alpha() (detectda.hypo.VacuumSeries method)
(detectda.VacuumSeries method)
alps() (in module detectda.hlpr)
alps_plot() (detectda.ImageSeries method)
(detectda.imgs.ImageSeries method)
B
block_sum() (in module detectda.hlpr)
C
calc_close() (in module detectda.hlpr)
calc_reject() (in module detectda.hlpr)
convert_to_df() (detectda.ImageSeriesPlus method)
(detectda.imgs.ImageSeriesPlus method)
D
degp_totp() (in module detectda.hlpr)
detectda
module
detectda.hlpr
module
detectda.hypo
module
detectda.idpo
module
detectda.imgs
module
F
fit() (detectda.hypo.VacuumSeries method)
(detectda.ImageSeries method)
(detectda.ImageSeriesPlus method)
(detectda.imgs.ImageSeries method)
(detectda.imgs.ImageSeriesPlus method)
(detectda.VacuumSeries method)
fitsmoo() (in module detectda.hlpr)
G
gen_images() (detectda.hypo.VacuumSeries method)
(detectda.VacuumSeries method)
get_alps() (detectda.ImageSeries method)
(detectda.imgs.ImageSeries method)
get_be() (in module detectda.hlpr)
get_cc() (in module detectda.hlpr)
get_degp_totp() (detectda.ImageSeries method)
(detectda.imgs.ImageSeries method)
get_lifetimes() (detectda.ImageSeriesPlus method)
(detectda.imgs.ImageSeriesPlus method)
get_midlife_coords() (detectda.ImageSeriesPlus method)
(detectda.imgs.ImageSeriesPlus method)
get_pers_entr() (detectda.ImageSeries method)
(detectda.imgs.ImageSeries method)
get_pers_im() (detectda.ImageSeriesPlus method)
(detectda.imgs.ImageSeriesPlus method)
get_pers_mag() (detectda.ImageSeriesPlus method)
(detectda.imgs.ImageSeriesPlus method)
get_pers_stats() (detectda.ImageSeriesPlus method)
(detectda.imgs.ImageSeriesPlus method)
getxy_col() (in module detectda.hlpr)
H
HomologyError
I
identify_polygon() (in module detectda.idpo)
ImageSeries (class in detectda)
(class in detectda.imgs)
ImageSeriesPickle (class in detectda)
(class in detectda.imgs)
ImageSeriesPlus (class in detectda)
(class in detectda.imgs)
K
kolm_dist() (detectda.hypo.VacuumSeries method)
(detectda.VacuumSeries method)
M
module
detectda
detectda.hlpr
detectda.hypo
detectda.idpo
detectda.imgs
P
pd_thresh_calc() (in module detectda.hlpr)
pd_threshold() (detectda.ImageSeriesPlus method)
(detectda.imgs.ImageSeriesPlus method)
pers_entr() (in module detectda.hlpr)
persmoo() (in module detectda.hlpr)
pg0() (in module detectda.hlpr)
plot_hypo() (detectda.hypo.VacuumSeries method)
(detectda.VacuumSeries method)
plot_im() (detectda.ImageSeries method)
(detectda.ImageSeriesPlus method)
(detectda.imgs.ImageSeries method)
(detectda.imgs.ImageSeriesPlus method)
plot_pi_sig() (detectda.ImageSeriesPlus method)
(detectda.imgs.ImageSeriesPlus method)
proc_pers_im() (detectda.ImageSeriesPlus method)
(detectda.imgs.ImageSeriesPlus method)
S
std_video() (in module detectda.hlpr)
T
transform() (detectda.hypo.VacuumSeries method)
(detectda.VacuumSeries method)
TrivialImageError
V
VacuumSeries (class in detectda)
(class in detectda.hypo)
VidPol (class in detectda.imgs)
W
weight_func() (in module detectda.hlpr)